| 2023 | | South-east Marine Parks Network Management Plan 2023-2033 (May 2023) | | | | |
| 2023 | | The Expansion of Macquarie Island Marine Park (May 2023) | | | | |
| 2023 | | National Conversation Starter for Developing Australia’s Science and Research Priorities and National Science Statement (April 2023) | | 2022 | | AMSA NT - Middle Arm Sustainable Development Precinct - Strategic Environmental Assessment and EIS (June 2022) |
| 2022 | | Senate Inquiry on Climate-related Marine Invasive Species (October 2022) | | 2022 | | AMSA NSW - NSW Marine Park Network Management Plan (January 2022) |
| 2022 | | Offshore Renewable Energy Infrstructure Area Proposal - Bass Strait off Gippsland (October 2022) | | 2022 | | AMSA NT - Wildlife Trade Operation for Barramundi Fishery (January 2022) |
| 2022 | | Review of Australian Biological Resources Study (September 2022) | | 2021 | | AMSA VIC - Invasive Marine Pest Module (December 2021) |
| 2021 | | Queensland Sea Cucumber Fishery (East Coast) (September 2021) | | 2021 | | AMSA NSW - Western Harbour Tunnel and Beaches Link Submission (June 2021) and associated responses to Supplementary Questions from Parliamentary Inquiry (October 2021) |
| 2021 | | Indian Ocean Territories Marine Parks Proposal (August 2021) | | 2021 | | AMSA NT Submission on the NT Parks 2022-52 Masterplan Consultation Paper (October 2021) |
| 2021 | | Star of the South Offshore Wind Farm Project
(July 2021) | | 2021 | | AMSA VIC Draft Victoria Marine and Coastal Strategy (September 2021) |
| 2021 | | Australian Curriculum Review Consultation
(June 2021) | | 2021 | | AMSA NT - Barossa Offshore Gas Project: Development Drilling & Completions (July 2021) |
| 2020 | | Draft Policy on Great Barrier Reef Interventions (July 2020) | | 2021 | | AMSA WA - Proposed marine parks in the Bucaneer Archipelago and surrounds (June 2021) |
| 2020 | | Review of the Environmental Protection and Biodiversity Conservation Act 1999 (April 2020) | | 2020 | | AMSA NT - NT EPA Draft review into seabed mining in the Northern Territory (November 2020) |
| 2019 | | Limmen Bight Marine Park Draft Plan of Management (October 2019) | | 2020 | | AMSA SA - Proposed changes to SA's marine parks (July 2020) |
| 2019 | | Response to consultation on the near coastal qualifications review and proposed Marine Order 5065 (Certificates of competency - national law) 2019 (September 2019) | | 2020 | | AMSA NSW - Western Harbour Tunnel and Warringah Freeway Upgrade (March 2020) |
| 2019 | | Stromlo-1 Exploration Drilling Program Draft Environmental Plan (March 2019) | | 2018
| | AMSA NSW - Press Release on Sydney Marine Park (September 2018) |
| 2019 | | Marine National Facility Access Framework (February 2019) | | 2018 | | AMSA NSW - Proposed Marine Park in Hawkesbury Shelf Marine Bioregion (September 2018) |
| 2018 | | Australia's Strategy for Nature 2018-2030
(March 2018) | | 2016 | | AMSA WA - The Yawuru Nagulagun/Roebuck Bay Marine Park Indicative Joint Management Plan (November 2016) |
| 2017 | | Commonwealth Marine Reserves Draft Plans 2017 (September 2017) | | 2016 | | AMSA NSW - Summary of the Environment Panel's Key Environmental Issues for Sydney
(October 2016) |
| 2017 | | Marine Pest Plan 2017-2022 (v2.0) (June 2017) | | 2016 | | AMSA WA - The Application to the Department of the Environment on the Marine Aquarium Fish Managed Fishery and the Take of Marine Aquarium Species for Aquaculture Brookdstock Purposes (October 2016) |
| 2017 | | Innovation and Science Australia 2030 Strategic Plan Issues Paper (May 2017) | | 2016 | | AMSA WA - Proposed North Kimberley Marine Park Draft Joint Management Plan (May 2016) |
| 2017 | | Draft 2016 National Research Infrastructure Roadmap (January 2017) | | 2016 | | AMSA NSW - Hawkesbury Shelf Marine Bioregion Assessment (May 2016) |
| 2016 | | Current and future impacts of climate change on marine fisheries and biodiversity (November 2016) | | 2015 | | AMSA WA - Indicative Management Plan for the proposed Yawuru Nagulagun Marine Park and Yawuru Birragun Conservation Park
(September 2015) |
| 2016 | | National Research Infrastructure Roadmap Capability Issues Paper (September 2016) | | 2014 | | AMSA WA - WA Lethal Drum Line Program as Part of its Shark Hazard Mitigation Strategy (June 2014) |
| 2015 | | Commonwealth Marine Reserves Review Committee (April 2015) | | 2013 | | AMSA NSW - Changes to management of the NSW marine estate and amnesty on fishing in sanctuary zones (June 2013) |
| 2014 | | IMOS Strategy 2015-25 Plan (May 2014) | | 2013 | | AMSA VIC - VCC Victorian Coastal Strategy 2014 (June 2013) |
| 2014 | | Draft National Environment and Community Biosecurity RD&E Strategy 2014-2017 (May 2014) | | 2013 | | AMSA VIC - VEAC Marine Investigation Dicussion Paper (May 2013) |
| 2012 | | House of Representatives Inquiry into the role of science for fisheries & aquaculture (May 2012) | | 2003 | | AMSA QLDN - Representative Areas Program (August 2003) |
| 2012 | | Australian biofouling management requirements (RIS) (February 2012) | | 2003 | | AMSA QLDN - Ecological Assessment of the Qld East Coast Otter Trawl Fishery (January 2003) |
| 2012 | | Marine Bioregional Plan for the Temperate East marine region (February 2012) | | | | |
| 2011 | | Marine Bioregional Plan for the North-west marine region (November 2011) | | | | |
| 2011 | | Marine Bioregional Plan for the North marine region (November 2011) | | | | |
| 2011 | | South-west Commonwealth marine reserve network (August 2011) | | | | |
| 2011 | | Inquiry into Australia's Biodiversity in a Changing Climate (July 2011) | | | | |
| 2009 | | Review of the National Biodiversity Strategy, Australia's Biodiversity Conservation Strategy 2010-2020 (May 2009) | | | | |
| 2007 | | AMSA-ACRS MPA Consensus Statement (September 2007) | | | | |
| 2006 | | Science and Innovation Study (July 2006) | | | | |
| 2006 | | Senate MPA Inquiry (March 2006) | | | | |
| 2006 | | South East Marine Regional Plan (March 2006) | | | | |
| 2005 | | Marine Taxonomy in the New Millennium: A Discussion Paper for the Oceans Policy Science Advisory Group (April 2005) | | | | |
| 2005 | | Draft Implementation Framework for the National Collaborative Research Infrastructure Strategy (April 2005) | | | | |
| 2005 | | Draft Strategic Assessment of Offshore Petroleum Exploration and Appraisal Activities (April 2005) | | | | |
| 2003 | | Great Barrier Reef Marine Park Draft Zoning Plan (August 2003) | | | | |
| 2002 | | National Research Priorities (August 2002) | | | | |